[R] Diagnosing Documentation Issues

[stephen sefick]

Mac OS X 10.5.4
intel processor
R 2.7.1
MacTex - latest version (yesterday and checked for updates)
I am trying to diagnose a documentation issue.  I don't know TeX at
all- I may have a friend who does I will find out tonight, but this is
more of a procedural question.  I have Read the FAQ, R package manual,
etc, but can't seem to find a "how to make everything play together
nicely" document- and this, I'm sure, is ignorance on my part.

1. I have run R CMD check and everything is fine, including the check
on the .Rd files.  There is latex to pdf found.  and then there is a
warning message at the end about the latex.
2. In the file created by R CMD check there is a pdf file with all of
the man pages there, but table of contents or index- just the separate
pages for each different function
3. My plan is to run R CMD Rd2dvi --pdf on each separate Rd file that
is part of the package to see which particular one is the bugger
4. Whatever else anyone suggests

I can upload the whole package somewhere so that this is reproducible
if the list would find that helpful.

Thanks,

Stephen Sefick
Southeastern Natural Sciences Academy
Research Scientist (Stream Ecology)
M.S. Forest and Natural Resources