[R] some problems with "linebuffer"; was: Bug?

[Uwe Ligges]

Johanna Hasmats wrote:
> Ok, attaching all files. You need to run it in the following order:
> 
> parse.RData
> 
> Korrelation.RData   I have reduced this script to only include the error
> part.
> 
> 
> Input files are in the following order:
> 
> oligo.prest.out for parse.RData to work. Produces the next input file 
> 
> oligolista for Korrelation.RData to work, which also needs the input file
> 
> 8_SkBr _13433630.gpr. 
> 
> 
> The function GenePixData can be found in the aroma package.
> 
> Thank you for your help,


1. Package kth is unavailable for us.

2. I do not know anything about a package called "aroma", it is neither 
on CRAN nor in the BioC repositories.

3. Can you please also try to make your example smaller?

4. The convention is to save R objects in .Rdata files, but to have R 
code in .R files.


Uwe Ligges




> Johanna
> 
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> *******************************************************************
> Johanna Hasmats
> Royal Institute of Technology 
> AlbaNova University Center 
> Stockholm Center for Physics, Astronomy and Biotechnology 
> School of Molecular Biotechnology 
> Department of Gene Technology 
> Visiting address: 
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> 106 91 Stockholm, Sweden 
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> ****************************************************************** 
> 
> -----Original Message-----
> From: Deepayan Sarkar [mailto:deepayan.sarkar at gmail.com] 
> Sent: Friday, August 31, 2007 8:12 PM
> To: Uwe Ligges
> Cc: Johanna Hasmats; r-help at stat.math.ethz.ch
> Subject: Re: [R] Bug?
> 
> On 8/31/07, Uwe Ligges <ligges at statistik.uni-dortmund.de> wrote:
>>
>> Johanna Hasmats wrote:
>>> Hi!
>>>
>>>
>>>
>>> How can I get around in R 2.5.1 in Windows:
>>>
>>>
>>>
>>> Error in strsplit(linebuffer, "") : object "linebuffer" not found
>>
>> Why should this be a bug in R, if you have no object named "linebuffer"
>> in the environments that are on the search path.
> 
> This sounds like it could have something to do with the command
> completion mechanism through package rcompgen (which does use an
> internal variable called 'linebuffer'). Since this doesn't seem to be
> a common problem, you need to give us instructions on how to reproduce
> it.
> 
> -Deepayan