[R] Data sets with usage in documentation object but not in code

[Martin Maechler]

>>>>> "JW" == Jonathan Weeks <weeksjp at gmail.com>
>>>>>     on Fri, 30 Nov 2007 08:46:50 -0700 writes:

    JW> Thank you both for your help. I still don't know what is happening. I
    JW> uploaded my package (plink_0.0-3) to ftp://cran.r-project.org/incoming

That's a place NOBODY can get it - but the CRAN maintainers,
and they are not very pleased to see a package there which does
not pass R CMD check.

Please use a different place!
If you cannot, please
copy-paste one of the *.Rd files into an e-mail (reply to this).

Martin Maechler, ETH Zurich

    JW> If you have any other suggestions they would be greatly appreciated

    JW> Take care

    JW> Jon

    JW> On Nov 29, 2007 10:30 AM, Peter Dalgaard <P.Dalgaard at biostat.ku.dk> wrote:

    >> Prof Brian Ripley wrote:
    >> > On Thu, 29 Nov 2007, Jonathan Weeks wrote:
    >> >
    >> >
    >> >> All,
    >> >>
    >> >> I recently made some changes to my package and ran R CMD check, but I
    >> >> am getting a warning regarding my data sets.
    >> >>
    >> >> I am running R 2.6.1 I have an image (.RData) file containing five
    >> >> data sets in the data subdirectory and an .Rd file for each of the
    >> >> data sets in the man subdirectory. When I run the check I get the
    >> >> warning
    >> >> "Data sets with usage in documentation object <dataset name> but not
    >> >> in code" for each dataset. I did not get this warning with R 2.5
    >> >>
    >> >> Does anyone have a suggestion for how to handle this?
    >> >>
    >> >
    >> > Show us a small reproducible example, or (failing that) make the package
    >> > available for test?  It's hard to guess at the cause, and hundreds of
    >> > packages do similar things.
    >> >
    >> >
    >> You could also look at the output of
    >> 
    >> tools:::list_data_in_pkg("yourPkg")
    >> 
    >> and see if it makes you any wiser. (AFAICS, this is the list that the
    >> usage lines get compared to)
    >> 
    >> --
    >> O__  ---- Peter Dalgaard             Øster Farimagsgade 5, Entr.B
    >> c/ /'_ --- Dept. of Biostatistics     PO Box 2099, 1014 Cph. K
    >> (*) \(*) -- University of Copenhagen   Denmark          Ph:  (+45)
    >> 35327918
    >> ~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk)                  FAX: (+45)
    >> 35327907
    >> 

    JW> [[alternative HTML version deleted]]

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