[R] Can't make affylmGUI work
Feifei
clarezoe at gmail.com
Wed Nov 28 17:54:56 CET 2007
Hi,
Can anyone help me of the affylmGUI package, I can't get it work and
searched for google but can't find any proper solutions.
I get the error information each time when I load my cells files, which
are shown in the following links.
-------------
http://clarezoe.googlepages.com/1.png
http://clarezoe.googlepages.com/2.png
http://clarezoe.googlepages.com/3.png
-------------
Errors also show in the terminal as below,
-------------
> Error: no function to return from, jumping to top level
In addition: Warning messages:
1: read.phenoData is deprecated, use read.AnnotatedDataFrame instead
2: The phenoData class is deprecated, use AnnotatedDataFrame (with
ExpressionSet) instead
Error in exprs(RawAffyData) :
no function to return from, jumping to top level
--------------
I'm running R version 2.6.1 under Linux Ubuntu 7.10
--------------
My sessionInfo is shown below,
--------------
> sessionInfo()
R version 2.6.1 (2007-11-26)
i486-pc-linux-gnu
locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
attached base packages:
[1] tools tcltk stats graphics grDevices utils
datasets
[8] methods base
other attached packages:
[1] affylmGUI_1.12.0 affy_1.12.2 affyio_1.6.1 Biobase_1.16.1
[5] limma_2.12.0
loaded via a namespace (and not attached):
[1] rcompgen_0.1-17
----------------
Can anyone help me with that? I really need it to work ASAP.
Thanks a lot!
Sincerely
Feifei
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