[R] CLUSTER Package

[Martin Maechler]

Hi Vallejo,

I'm pretty busy currently, and feel your question has much more
to do with how to use R more generally than with using the
functions from the  cluster package.

So you may get help from other R-help readers,
but maybe only after you have followed the posting-guide
and give a reproducible example as you're asked there.

Regards,
Martin Maechler

>>>>> "VallejoR" == Vallejo, Roger <Roger.Vallejo at ARS.USDA.GOV>
>>>>>     on Mon, 12 Mar 2007 10:28:01 -0400 writes:

    VallejoR> Hi Martin,
    VallejoR> In using the Cluster Package, I have results for PAM and DIANA
    VallejoR> clustering algorithms (below "part" and "hier" objects):

                                                                        

    VallejoR> part <- pam(trout, bestk)
    VallejoR> # PAM results


    VallejoR> hier <- diana(trout)
    VallejoR> # DIANA results

    VallejoR> GeneNames <- show(RG$genes)
    VallejoR> # Gene Names are in this object             

 

    VallejoR> But I would like also to know what genes (NAMES) are included in each
    VallejoR> cluster. I tried unsuccessfully to send these results to output files
    VallejoR> (clusters with gene Names). This must be an easy task for a good R
    VallejoR> programmer. I will appreciate very much directions or R code on how to
    VallejoR> send the PAM and DIANA results to output files including information on
    VallejoR> genes (Names) per each cluster.

 

    VallejoR> Thank you very much.

    VallejoR> Roger

 

 

    VallejoR> Roger L. Vallejo, Ph.D.

    VallejoR> Computational Biologist & Geneticist

    VallejoR> U.S. Department of Agriculture, ARS          

    VallejoR> National Center for Cool & Cold Water Aquaculture

    VallejoR> 11861 Leetown Road

    VallejoR> Kearneysville, WV 25430

    VallejoR> Voice:    (304) 724-8340 Ext. 2141

    VallejoR> Email:   roger.vallejo at ars.usda.gov <mailto:roger.vallejo at ars.usda.gov> 

 


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