[R] problem with summary of data
Nel N.
eeneling at yahoo.com
Sat Sep 23 15:55:10 CEST 2006
Greetings everybody,
I'm new with R and I'm trying to do some statistical analysis with R using
my data.
It is a DNA microarray data with 69 samples(row) and 7070 (column)
variables. I read the file using the command
'file.table' and it can be done with no error.However, when I tried running
a summary of the data, the result was not what I had expected. Below is an
extract of the result. And I knew that the command summary will give a
summary of a data's descriptive statistics such as it's median,mean,etc.So,
what i want is the statistics summary of each gene (in each column).
V7065 V7066 V7067 V7068 V7069
20 :29 20 :69 117 : 2 39 : 6 20 :69
25 : 4 X16699_at: 1 134 : 2 42 : 4 L49218_f_at: 1
30 : 4 142 : 2 44 : 4
23 : 3 170 : 2 46 : 4
26 : 3 203 : 2 38 : 3
21 : 2 96 : 2 58 : 3
(Other):25 (Other):58 (Other):46
V7070 V7071
30 : 5 20 :69
21 : 4 Z78285_f_at: 1
51 : 4
64 : 4
27 : 3
36 : 3
(Other):47
My data is in .dat format. Also, I have downloaded a few .rda files to be
tried out with R but how do I view them as data per se, like the .dat file
can be viewed and edited using Notepad, how about the .rda files?
I express my greatest appreciation all who help.
Thank you.
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