[R] Biobass, SAGx, and Jonckheere-Terpstra test

Prof Brian Ripley ripley at stats.ox.ac.uk
Thu Jun 29 21:28:59 CEST 2006

It is *Biobase*.  That is part of BioC (www.bioconductor.org), although I 
agree that it should make clear where to get non-CRAN packages. (Worse: 
SAGx used not to require it, and only the update to the most recent 
version does.)

On Thu, 29 Jun 2006, Horace Tso wrote:

> Hi list,
> I tried to load the package SAGx and failed because it complains it's
> looking for the Biobass which is not there. Then I looked up the package
> list and Biobass is not found.
> I'm trying to run the Jonckheere-Terpstra test and from what I see in
> the R archive, SAGx is the only place it's been implemented.
>> library(SAGx)
> Loading required package: multtest
> Loading required package: survival
> Loading required package: splines
> Loading required package: sma
> Error in loadNamespace(i, c(lib.loc, .libPaths())) :
>        there is no package called 'Biobase'
> Error: package/namespace load failed for 'SAGx'
> Horace W. Tso
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Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595

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