[R] Help with short time series

[Simone Vincenzi]

Thanks for the help. 
I provide below the dataset I'm using, it's a little bit different from what 
I was describing (sorry for that). The streams are 3 and I have an unequal 
number of years for each stream.

Stream Density Year 
1     Zak    0.20 2000 
2     Zak    0.36 2001 
3     Zak    0.41 2002 
4     Zak    0.34 2003 
5     Zak    0.28 2004 
6     Gor    0.08 1999 
7     Gor    0.05 2000 
8     Gor    0.14 2001 
9     Gor    0.16 2002 
10    Gor    0.13 2003 
11    Gat    0.18 2004 
12    Gat    0.10 2001 
13    Gat    0.37 2002 
14    Gat    0.57 2003 
15    Gat    0.47 2004

I tried to follow the suggestions of Dieter, but the model does not fit. 
Any suggestion will be appreciated



Dear R-list, 
> I have a statistical problem with the comparison of two short time-series 
of 
> density data in an ecological framework. I have to compare two short time 
> series (5 years, one value for each year) of species density data (it is 
the 
> density of fish in two different streams) to test if the two means of the 
> five densities are significantly different, so basically if the two mean 
> stream-specific fish densities are significantly different. 
> I don't think I can use a straight t-test due to the problem of 
> autocorrelation and I don't think I can use a repeated measure ANOVA as I 
> don't have any replicates. 
> Any help would be greatly appreciated.

try something like

library(nlme) 
summary(lme(dens~stream+year,data=mystreamdata,random=~year|stream))

This should also give you an estimate if the slopes are different if you 
test 
against the simplified model

summary(lme(dens~stream+year,data=mystreamdata,random=~1|stream))

Since you did not provide a short example data set, this is only 
approximatively 
right.

Dieter

-- 
Universita' degli Studi di Parma (http://www.unipr.it)