[R] plot svm
bgmail
ramos.beatriz at gmail.com
Fri Jul 1 16:01:05 CEST 2005
Hello
I'm working with DNA microarrays and want to classify them with SVM. I
want to plot the results and it's imposible for me. I found others
tutorials and examples (with iris and cats data) where you can plot the
results with plot.svm, but you need to write a formula and I don't know
how to do this with golubEsets data, for example .
plot ( svm1, golubTrain, formula)
For example, Iris Data:
Sepal.Length Sepal.Width Petal.Length Petal.Width Species
1 5.1 3.5 1.4
0.2 setosa
2 4.9 3.0 1.4
0.2 setosa
3 4.7 3.2 1.3
0.2 setosa
4 4.6 3.1 1.5
0.2 setosa
5 5.0 3.6 1.4
0.2 setosa
6 5.4 3.9 1.7
0.4 setosa
7 4.6 3.4 1.4
0.3 setosa
8 5.0 3.4 1.5
0.2 setosa
m2 <- svm(Species~., data = iris)
plot(m2, iris, Petal.Width ~ Petal.Length, slice = list(Sepal.Width = 3,
Sepal.Length = 4))
I should be grateful if you would send me information about how to plot
the golubEsets data (for example the formula, because I have tested
several options but neither of them work). My data are very similar
(expression values with several conditions), so I could plot my results
if I knew how to plot golub data.
Thanks a lot
Beatriz
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