[R] Plotting with Statistics::R, Perl/R
Leah Barrera
lbarrera at bioinf.ucsd.edu
Sat Jan 22 03:06:45 CET 2005
I am trying to plot in R from a perl script using the Statistics::R
package as my bridge. The following are the conditions:
0. I am running from a Linux server.
1. Even without xwindows the following saves test.png correctly from an
interactive session with R:
> xy<-cbind(1,1)
> png("test.png")
> plot(xy)
> dev.off()
2. However, when called from the perl script I get the ff. warning:
--
X11 module is not available under this GUI
--
and nothing is saved
3. I tried to hijack the script by modifying
lib/Statistics/R/Bridge/Linux.pm to remove the
"gui=none" setting
--
$this->{START_CMD} = "$this->{R_BIN} --slave --vanilla --gui=none" ;
--
changed to
--
$this->{START_CMD} = "$this->{R_BIN} --slave --vanilla" ;
--
4. When plotting in R from the perl script again, I no longer get the
warning and I get test.png saved, but it is empty.
Please advise.
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