[R] R 2.2.1 is released

Peter Dalgaard p.dalgaard at biostat.ku.dk
Tue Dec 20 12:01:38 CET 2005

I've rolled up R-2.2.1.tar.gz a short while ago. This is a maintenance
release containing mainly bugfixes.

See the full list of changes below.

You can get it from


(give it some time to arrive there) or wait for it to be mirrored at a
CRAN site nearer to you. If you're *really* impatient,
http://www.biostat.ku.dk/~pd/R-release should work too. Binaries for
various platforms will appear in due course.
There is also a version split for floppies.

        For the R Core Team

        Peter Dalgaard

These are the md5sums for the freshly created files, in case you wish
to check that they are uncorrupted:

94d55d512a9ba36caa9b7df079bae19f  COPYING
fad9b3332be894bab9bc501572864b29  COPYING.LIB
de541086db1146c1595d5be1d94a1b94  FAQ
70447ae7f2c35233d3065b004aa4f331  INSTALL
2c832b91154f663c0f07930d5e2a3dee  NEWS
88bbd6781faedc788a1cbd434194480c  ONEWS
4f004de59e24a52d0f500063b4603bcb  OONEWS
42542290c6d1585af7ded330f811385c  R-2.2.1.tar.gz
a9126622c51bef60e3febb41b2e737e5  R-2.2.1.tar.gz-split.aa
e89b51f6dbc1ddffd646a3f1f203f4f1  R-2.2.1.tar.gz-split.ab
15d93b1b5c38b6178ddcf9485dbd8cf1  R-2.2.1.tar.gz-split.ac
282bbbdd00c0066b6042ce16844036be  R-2.2.1.tar.gz-split.ad
6d00347225140283e6c93f253cb7c180  R-2.2.1.tar.gz-split.ae
2441c58fc24a69dd5cc65517a0b5e285  R-2.2.1.tar.gz-split.af
4ddcd13639debd984e3664a6b0681bd4  R-2.2.1.tar.gz-split.ag
4a042d73ec00d7d46be1cc704063dc39  R-2.2.1.tar.gz-split.ah
0d5d54a78ab994bacb12a98bece1306f  R-2.2.1.tar.gz-split.ai
69b38c655e4c1b7c36cb0abaa4890253  R-2.2.1.tar.gz-split.aj
42542290c6d1585af7ded330f811385c  R-latest.tar.gz
56a780cdec835c5c598f8dfc0738f7f3  README
020479f381d5f9038dcb18708997f5da  RESOURCES

Here is the relevant part of the NEWS file:


    o	options("expressions") has been reduced to 1000: the limit
	of 5000 introduced in 2.1.0 was liable to give crashes from C
	stack overflow.


    o	Use of 'pch' (e.g. in points) in the symbol font 5 is now
	interpreted in the single-byte encoding used by that font.
	Similarly, strwidth now recognizes that font 5 has a different
	encoding from that of the locale.  (These are likely to affect
	the answer only in MBCS locales such as UTF-8.)

    o	The URW font metrics have been updated to versions from late
	2002 which cover more glyphs, including Cyrillic.

    o	New postscript encodings for CP1250 (Windows East European),
	ISO Latin-7 (8859-13, Latvian, Lithuanian and Maori), Cyrillic
	(8859-5), KOI8-R, KOI8-U and CP1251.

    o	configure has more support for the Intel and Portland Group
	compilers on ix86 and x86_64 Linux.

    o	R CMD INSTALL will clean up if interrupted (e.g. by ctrl-C from
	the keyboard).

    o	There is now a comprehensive French translation of the messages,
	thanks to Philippe Grosjean.


    o	The undocumented use of atan() with two arguments is deprecated:
	instead use atan2() (as documented).

    o	The 'vfont' argument of axis() and mtext() is deprecated
	(it currently warns and does nothing).

    o   The function mauchley.test() is deprecated (was a misspelling)
	and replaced by mauchly.test()


    o	The malloc's of AIX and OSF/1 which return NULL for size 0
	are now catered for in src/main/regex.c.

    o	Names of list elements which are missing are now printed as
	$<NA> and not $"NA" (which is how the non-missing name "NA" is
	printed).  (Brought up in discussion of PR#8161.)

    o	help.start() was not linking R.css for use by its front page and
	immediate links (2.2.0 only).

    o	Indexing by character NA matched the name "NA".

    o	The arith-true test used random inputs and did not set the seed, so
	it could fail very occasionally.

    o	arima() with 'fixed' supplied and p=0 for the non-seasonal
	part could give spurious warnings about 'some AR parameters
	were fixed'.

    o	summary.matrix() could give an infinite recursion on some
	classed objects (e.g. those of class "Surv").

    o	The 255th character in an 8-bit character set was not handled
	correctly as a letter on some platforms where C char is
	signed: for example it was printed as \377 and not allowed in
	variable names.  (Spotted by Alexey Shipunov in Russian

    o	Conversion from POSIXct to POSIXlt is done more accurately
	around the change of DST in years not supported by the OS
	(pre-1970 on Windows and some others, and in the far past or

    o	chisq.test(cbind(1:0, c(7,16)), simulate.p = TRUE) gave wrong
	P-values on some platforms. (PR#8224)

    o	pdf() was not writing details of the encoding to the file
	correctly.  (Spotted by Alexey Shipunov in Russian encodings.)

    o	image() was failing with an error when plotting a matrix
	of all NA values.  (PR#8228)

	image() could fail if called with add=FALSE (the default) and
	length(x)=1 for either x or y, as it uses the plot coordinates of
	the previous plot (if any).

    o	tools::checkMD5sums was not accepting file names with spaces in.

    o	The plot() method for TukeyHSD() needed updating after adding
	adjusted p-values.  (PR#8229)

    o	read.fwf() did not work for header = TRUE.  (PR#8226)

    o	diag() failed when its argument had NA values in its dimnames.

    o	[g]sub(pcre=TRUE) did not work correctly with \U and \L in a
	UTF-8 locale, even on the example on the help page.

    o	promptMethods() was failing if the "methods" argument was supplied.

    o	is.loaded() now finds Fortran symbols whether or not the
	registration mechanism has been used.

    o	ISODateTime() mistakenly corrected non-existent times (when
	DST was being started) in the current time zone.

    o	Some replacement operations on data frames gave incorrect
	answers, e.g. DF[3:4, "y"] if column "y" did not exist or was
	a matrix.

    o	getGraphicsEvent() would cause memory corruption if passed an
    	empty prompt.

    o	qr() and chol() now pivot the colnames of the result when
	pivoting is used.  (PR#8258)

    o	example(points) omitted pch=0, although it was valid and
	said in the text to be illustrated.

    o	plot.default() had an unused 'lab' argument, thereby preventing
	the 'lab' graphics parameter being passed through '...' .

    o	Although polygon(col = NA) was the stated default, specifying
	NA was not equivalent to omitting the argument (but col=NULL
	was equivalent).

    o	Im(-1) was pi. (PR#8272, a side effect from all previous
	versions of R returning the same value for Im and Arg of
	non-complex numbers.)

    o	symbols(fg) defaulted to colour 1, not par("col") as documented.
	It does now defaults to par("col").

    o	par("family") did not check the length of the value (up to 49
	bytes) and so could segfault.

    o	aggregate.ts() did not allow for rounding in frequencies such
	as 1/5.

    o	prcomp(tol=) was not dropping the sdev's corresponding to
	dropped columns.

    o	Subassignment of a vector which increased the length of the
	vector _and_ had the wrong length of replacement could
	occasionally segfault.  (This has been there since at least
	mid 1997.)

    o	The registration of .Fortran symbols was broken: these could
	only be looked up if there were also .Call symbols registered!

    o	R CMD build was incorrectly rejecting the recommended form of
	name for a translation package, 'Translation-ll'.  (PR#8314)

    o	numericDeriv() gave nonsense results unless the variables were
	real, which was not checked.

    o	predict.prcomp() would sometimes give an error when predicting
	a single observation.  (PR#8324)

    o	mapply() could segfault if MoreArgs was not a list.  (PR#8332)

    o	The arith-true test used identical() on floating-point results,
	and this allowed a failure when the relative difference was
	less than .Machine$double.eps but non-zero.

    o	qbinom() was not accepting p = -Inf when log.p = TRUE, although
	it is a legitimate value.

    o	write.csv[2] only accepted logical constants for 'row.names', and
	now accepts variables.

    o	Conversion of .Rd files did not correctly match braces
	enclosing a whole argument, e.g. \eqn{{\bf a}}{a}.

    o	The C function pythag (used if hypot was not available) would
	infinite-loop on systems with effective optimizing compilers.

    o	Writing long formats (more than 1000 bytes) with connections
	that use dummy_vfprintf could fail on some systems.  The limit
	has been changed to 100000 bytes pending a more complete fix in R

    o	Making in src/nmath/standalone without making R was not
	making Rmath.h.

    o	Both the R front-end and INSTALL could find the attempted
	temporary directory name already in use on platforms without
	mktemp (and a genuine Bourne shell /bin/sh, not bash).  Now
	both the process ID and a timestamp are used to create the
	directory name.

    o	[dpqr]gamma now return NaN for an invalid 'shape' parameter
	(rather than throw an error), for consistency with other
	distribution functions.

    o	t() now longer drops dimnames 'list(NULL,NULL)' or 'list(NULL)'.

    o	Influence measures such as rstandard() and cooks.distance()
	could return infinite values rather than NaN for a case which
	was fitted exactly.  Similarly, plot.lm() could fail on such
	examples.  plot.lm(which = 5)  had to be modified to only plot
	cases with hat < 1.  (PR#8367)

	lm.influence() was incorrectly reporting 'coefficients' and
	'sigma' as NaN for cases with hat = 1, and on some platforms
	not detecting hat = 1 correctly.

    o	Rmath.h for standalone Rmath was not recording HAVE_WORKING_LOG,
        so R_log was not available on platforms defining it.

    o	HoltWinters() was using a slightly incorrect formula in the C code.

    o	dir.create() could be confused by a trailing slash on the
	path, and by paths containing drives on Windows.

    o	The search for tcl/tkConfig.sh looked in 'lib' before 'lib64'
	directories (and not at all in /usr/local/lib64) and so might
 	prefer 32- to 64-bit versions if both are available.

    o	nlminb() used an uninitialized variable unless bounds were supplied,
	and so failed on 64-bit Solaris.

   O__  ---- Peter Dalgaard             Øster Farimagsgade 5, Entr.B
  c/ /'_ --- Dept. of Biostatistics     PO Box 2099, 1014 Cph. K
 (*) \(*) -- University of Copenhagen   Denmark          Ph:  (+45) 35327918
~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk)                  FAX: (+45) 35327907

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