[R] graph algorithms in R

A.J. Rossini rossini at blindglobe.net
Tue Jan 20 02:26:19 CET 2004

Tobias Sing <tsing at mpi-sb.mpg.de> writes:

>> I was wondering if there are any packages available that can represent
>> mathematical graphs along with functions to manipulate them? Google
>> did'nt turn up anything ( I may be asking too much of R :-/ )
> I was looking for the same thing the other day, and found that a graph package 
> for R is being developed as part of the bioconductor project. However, I 
> haven't tried it yet, so I don't know about the status (judging from the 
> function list one shouldn't expect a comprehensive collection of graph 
> algorithms, but at least the base structures and some random graph stuff seem 
> to be implemented already). There is also a package for visualization, 
> Rgraphviz.
> http://www.bioconductor.org/
> http://www.bioconductor.org/repository/release1.3/package/html/graph.html
> http://www.bioconductor.org/repository/release1.2/package/html/Rgraphviz.html

I almost forgot the wrappers to BOOST-Graph (the BOOST graph
library), RGBL, also in Bioconductor.


rossini at u.washington.edu            http://www.analytics.washington.edu/ 
Biomedical and Health Informatics   University of Washington
Biostatistics, SCHARP/HVTN          Fred Hutchinson Cancer Research Center
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