[BioC] KEGG & hyperGTest: an example?

[Marc Carlson]

Hi Muhammad,

Probably the closest we have come (so far) towards supporting this is 
described here:

http://www.bioconductor.org/packages/release/bioc/vignettes/GOstats/inst/doc/GOstatsForUnsupportedOrganisms.pdf

You can see with the KEGG example how a very flat set of annotations can 
be tested, and with GO how a real DAG can be tested.  So by extending 
the relevant classes I think you probably could do that without too much 
trouble.


  Marc




On 03/17/2014 08:49 AM, Muhammad Javed wrote:
> Hi,
>
> Can we pass our own ontology in function hyperGTest ?
>
>
> Muhammad Javed, Ph.D.
> Software Developer/Research Associate
> Advaita Corporation
> www.AdvaitaBio.com
>
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