[BioC] error on heatmap
guest [guest]
guest at bioconductor.org
Mon Mar 10 01:02:32 CET 2014
Dear Biocondutor users,
I would like to plot the heatmap using metagenomeSeq package, I used the same example dataset and same R scripts from package tutorial, but it has the error message when I do the heatmap. Please see R scripts and error message below:
> data(mouseData)
> trials = pData(mouseData)$diet
> heatmapColColors = brewer.pal(12, "Set3")[as.integer(factor(trials))]
> heatmapCols = colorRampPalette(brewer.pal(9, "RdBu"))(50)
> plotMRheatmap(obj = mouseData, n = 200, cexRow = 0.4, cexCol = 0.4,trace = "none", col = heatmapCols, ColSideColors = heatmapColColors)
Error in heatmap.2(mat2, ...) : lazy-load database 'P' is corrupt
In addition: Warning messages:
1: In heatmap.2(mat2, ...) : restarting interrupted promise evaluation
2: In heatmap.2(mat2, ...) : internal error -3 in R_decompress1
Thanks for the help, I really appreciate it.
-- output of sessionInfo():
> sessionInfo()
R version 3.0.2 (2013-09-25)
Platform: x86_64-apple-darwin10.8.0 (64-bit)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] parallel stats graphics grDevices utils datasets methods base
other attached packages:
[1] metagenomeSeq_1.4.0 matrixStats_0.8.14 limma_3.18.13 Biobase_2.22.0 BiocGenerics_0.8.0 BiocInstaller_1.12.0
[7] RColorBrewer_1.0-5 vegan_2.0-10 lattice_0.20-27 permute_0.8-3 Heatplus_2.8.0 gplots_2.12.1
loaded via a namespace (and not attached):
[1] bitops_1.0-6 caTools_1.16 gdata_2.13.2 grid_3.0.2 gtools_3.3.1 KernSmooth_2.23-10 R.methodsS3_1.6.1
[8] tools_3.0.2
--
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