[BioC] XPS with Arabidopsis Gene 1.1 ST Array Strip

[Benedikt [guest]]

Hi,

I would like to analyse data from the Arabidopsis Gene 1.1 ST Array Strip with the XPS package. I created a scheme and tried to load some example data with with the function import.data(). This error message will appear:

-------------------------
dataAll <- import.data(scheme.Ara, "AraGene1_1", celdir=celdir, celfiles=celfiles)
Opening file </home/bathmer/R_projekte/monika/xps_test/libraryfiles/schemes/Scheme_Ara11ST_NA34.root> in <READ> mode...
Creating new file </home/bathmer/R_projekte/monika/xps_test/AraGene1_1_cel.root>...
Importing </home/bathmer/R_projekte/monika/xps_test/cel/AraGene-1_1-st_hybridization-rep_strip-1_A01.cel> as <AraGene_1_1_st_hybridization_rep_strip_1_A01.cel>...
Error: Number of data groups is not 1!
Error: CEL-file with version/magic number </home/bathmer/R_projekte/monika/xps_test/cel/AraGene-1_1-st_hybridization-rep_strip-1_A01.cel> is not supported.
Fehler in import.data(scheme.Ara, "AraGene1_1", celdir = celdir, celfiles = celfiles) : 
  error in function ‘ImportData’
Zusätzlich: Warnmeldung:
In import.data(scheme.Ara, "AraGene1_1", celdir = celdir, celfiles = celfiles) :
  characters [](){}.:# etc in 'celnames' will be replaced  with '_'
----------------------------

Does XPS support this kind of cel files?

Regards,

Benedikt

 -- output of sessionInfo(): 

sessionInfo()
R version 3.0.2 (2013-09-25)
Platform: x86_64-pc-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=de_DE.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=de_DE.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=de_DE.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] xps_1.24.0

loaded via a namespace (and not attached):
[1] tools_3.0.2
> traceback()
Kein traceback vefügbar 

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