[BioC] install qvalue

[Dan Tenenbaum]

Actually, it turns out that the mirror in Anhui does not contain a mirror of BioC 2.11. 
If it is feasible, you might consider upgrading to the release version of R (3.0.2) and
Bioconductor (2.13). Then you would be able to use that mirror.
Dan


----- Original Message -----
> From: "Dan Tenenbaum" <dtenenba at fhcrc.org>
> To: "liyue [guest]" <guest at bioconductor.org>
> Cc: "qvalue Maintainer" <jstorey at u.washington.edu>, bioconductor at r-project.org
> Sent: Thursday, January 2, 2014 8:15:38 AM
> Subject: Re: [BioC] install qvalue
> 
> Hi,
> 
> You might try changing Bioconductor mirrors with the
> chooseBioCmirror() command.
> For users in China the mirror in Anhui usually works.
> 
> Dan
> 
> 
> ----- Original Message -----
> > From: "liyue [guest]" <guest at bioconductor.org>
> > To: bioconductor at r-project.org, yueli7 at 126.com
> > Cc: "qvalue Maintainer" <jstorey at u.washington.edu>
> > Sent: Thursday, January 2, 2014 6:22:14 AM
> > Subject: [BioC] install qvalue
> > 
> > 
> > Hi,
> > 
> > I try to install qvalue.
> > 
> > > source("http://bioconductor.org/biocLite.R")
> > A new version of Bioconductor is available after installing the
> > most
> >   recent version of R; see http://bioconductor.org/install
> > Bioconductor version 2.11 (BiocInstaller 1.8.3), ?biocLite for help
> > > biocLite("qvalue")
> > BioC_mirror: http://bioconductor.org
> > Using Bioconductor version 2.11 (BiocInstaller 1.8.3), R version
> > 2.15.
> > Installing package(s) 'qvalue'
> > 警告信�：
> > 1: package ‘qvalue’ is not available (for R version 2.15.1)
> > 2: installed directory not writable, cannot update packages 'car',
> > 'chron',
> >   'colorspace', 'effects', 'Hmisc', 'lmtest', 'multcomp',
> >   'mvtnorm',
> >   'rgl',
> >   'sandwich', 'sm', 'strucchange', 'XML', 'zoo', 'cluster',
> >   'KernSmooth',
> >   'lattice', 'Matrix', 'mgcv', 'nnet', 'rpart', 'survival'
> > 
> > Thank you in advance for great help!
> > 
> > Best,
> > 
> > liyue
> > 
> >  -- output of sessionInfo():
> > 
> > > sessionInfo()
> > R version 2.15.1 (2012-06-22)
> > Platform: x86_64-pc-linux-gnu (64-bit)
> > 
> > locale:
> >  [1] LC_CTYPE=zh_CN.UTF-8       LC_NUMERIC=C
> >  [3] LC_TIME=zh_CN.UTF-8        LC_COLLATE=zh_CN.UTF-8
> >  [5] LC_MONETARY=zh_CN.UTF-8    LC_MESSAGES=zh_CN.UTF-8
> >  [7] LC_PAPER=C                 LC_NAME=C
> >  [9] LC_ADDRESS=C               LC_TELEPHONE=C
> > [11] LC_MEASUREMENT=zh_CN.UTF-8 LC_IDENTIFICATION=C
> > 
> > attached base packages:
> > [1] stats     graphics  grDevices utils     datasets  methods
> >   base
> > 
> > other attached packages:
> > [1] BiocInstaller_1.8.3
> > 
> > loaded via a namespace (and not attached):
> > [1] tools_2.15.1
> > 
> > 
> > --
> > Sent via the guest posting facility at bioconductor.org.
> > 
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> 
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