[BioC] Protein position to genomic location
Laurent Gatto
lg390 at cam.ac.uk
Mon Aug 18 00:59:07 CEST 2014
Dear Dave,
The mapping vignette [1] (in particular the Calculating new coordinates
section) from the Pbase package describes what you need, I believe.
Best wishes,
Laurent
[1] http://bioconductor.org/packages/devel/bioc/vignettes/Pbase/inst/doc/mapping.html
> Hello,
> I have a list of several hundred amino acid change and would like to
> locate the genomic location for each of them. I also have the
> transcript ID the amino acid position correspond to. I was wondering if
> this is possible using GenomicFeatures package? I guess this query is
> the opposite way that to most annotations for which there is a lot of
> documentation and tools.
>
> Thanks,
> Dave
>
> -- output of sessionInfo():
>
> R version 3.0.3 (2014-03-06)
> Platform: x86_64-apple-darwin10.8.0 (64-bit)
>
> locale:
> [1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8
>
> attached base packages:
> [1] stats graphics grDevices utils datasets methods base
>
>
> --
> Sent via the guest posting facility at bioconductor.org.
--
Laurent Gatto
http://cpu.sysbiol.cam.ac.uk/
More information about the Bioconductor
mailing list