[BioC] Unable to install hgu133plus2.db
Ellie McIntosh [guest]
guest at bioconductor.org
Mon Nov 11 00:12:46 CET 2013
Hi Everybody,
I'm Ellie, having a package installation problem,
When installing the package hgu133plus2.db on my win7 laptop through Rstudio I receive the following error.
I'm not sure what I need to do to fix this.
I've reinstalled MySQL Lite and updated R but have the same issue:
"error: RS-DBI driver: (error in statement: near "s": syntax error)"
Anybody have a similar problem or Idea.
Thank You.
Ellie
P.S. Output:
> library("hgu133plus2.db", lib.loc="C:/Users/Ellie's Angel/Documents/R/win-library/3.0")
Loading required package: AnnotationDbi
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: âBiocGenericsâ
The following objects are masked from âpackage:parallelâ:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport,
clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply,
parSapplyLB
The following object is masked from âpackage:statsâ:
xtabs
The following objects are masked from âpackage:baseâ:
anyDuplicated, as.data.frame, cbind, colnames, duplicated, eval, Filter, Find,
get, intersect, lapply, Map, mapply, match, mget, order, paste, pmax, pmax.int,
pmin, pmin.int, Position, rank, rbind, Reduce, rep.int, rownames, sapply,
setdiff, sort, table, tapply, union, unique, unlist
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with 'browseVignettes()'. To cite
Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: org.Hs.eg.db
Loading required package: DBI
Error : .onLoad failed in loadNamespace() for 'hgu133plus2.db', details:
call: sqliteExecStatement(con, statement, bind.data)
error: RS-DBI driver: (error in statement: near "s": syntax error)
Error: package or namespace load failed for âhgu133plus2.dbâ
-- output of sessionInfo():
sessionInfo()
R version 3.0.2 (2013-09-25)
Platform: x86_64-w64-mingw32/x64 (64-bit)
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] parallel stats graphics grDevices utils datasets methods base
other attached packages:
[1] org.Hs.eg.db_2.9.0 RSQLite_0.11.4 DBI_0.2-7 AnnotationDbi_1.22.6
[5] Biobase_2.20.1 BiocGenerics_0.6.0
loaded via a namespace (and not attached):
[1] IRanges_1.18.4 stats4_3.0.2 tools_3.0.2
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