[BioC] unable to install package

Martin Morgan mtmorgan at fhcrc.org
Thu Nov 7 04:02:14 CET 2013


On 11/06/2013 06:43 PM, ashok raja balla [guest] wrote:
>
> how to install bioconductor packages ?
> I'm unable to install any package from bioconductor.
> im using this in Win 7 home basic. please help me.
>
>   -- output of sessionInfo():
>
>> biocLite()
> BioC_mirror: http://bioconductor.org
> Using Bioconductor version 2.13 (BiocInstaller 1.12.0), R version 3.0.2.
> Warning message:
> installed directory not writable, cannot update packages 'foreign', 'lattice',
>    'Matrix', 'mgcv'
>> biocLite(affy)

try quoting the package name you would like to install

   biocLite("affy")

This is how it is shown on the package landing page, e.g.,

   http://bioconductor.org/packages/release/bioc/html/affy.html

Martin

> Error in match(x, table, nomatch = 0L) : object 'affy' not found
>
>
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