[BioC] oligo package

Benilton Carvalho beniltoncarvalho at gmail.com
Sat Jun 1 17:11:25 CEST 2013


It's likely that you need to upgrade your R installation (and then
install the latest oligo). b

2013/6/1 Shahenda El-Naggar [guest] <guest at bioconductor.org>:
>
> I used the function getProbeInfo from oligo package before and worked fine. I am trying to repeat the analysis but I get an error could not find function
> this is the script
> source("http://bioconductor.org/biocLite.R")
> biocLite("oligo")
> library(oligo)
> biocLite("pd.mogene.1.0.st.v1")
> library(pd.mogene.1.0.st.v1)
> geneCELs <- list.celfiles("D:\\c\\TCGA\\Data", full.names = TRUE)
> t<-read.celfiles(geneCELs)
> probein<-getProbeInfo(t, field=c('fid', 'fsetid', 'type'), probeType = "pm", target = "core", sortBy = "none")
>
>
>  -- output of sessionInfo():
>
>> probein<-getProbeInfo(t, field=c('fid', 'fsetid', 'type'), probeType = "pm", target = "core", sortBy = "none")
> Error: could not find function "getProbeInfo"
>
> --
> Sent via the guest posting facility at bioconductor.org.
>
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