[BioC] Normalization

[Steve Lianoglou]

Hi,

On Sat, Jan 26, 2013 at 9:51 PM, Leandro [guest] <guest at bioconductor.org> wrote:
>
> Quantile normalization is already one step in the gcrRMA( ) ou rma( ) function. I am using library(gcrma) or rma. I' m in doubt

I'm not sure what your question is. Are you asking if quantile
normalization is part of the `rma` or `gcrma` procedure?

If so, then please read through the documentation using ?rma and
?gcrma. You'll find that both function take a `normalize` parameter
which defaults to TRUE and is related to what I think you are asking.

HTH,

-steve

-- 
Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact