[BioC] AgiMicroRna problem
maryam shahmansoori [guest]
guest at bioconductor.org
Sat Jan 26 13:48:41 CET 2013
hello
I get data(GSE37527) from GEO database and I am trying to analyze(normalize and identify DE) them in to R with package AgiMicroRna. Does my Data fit with this package. In my data doesn't exist the columns gMeanSignal and gBGUsed.
For my purpose which package is better than another.
Please help me
thanks in advance
-- output of sessionInfo():
R version 2.15.1 (2012-06-22)
Platform: x86_64-pc-mingw32/x64 (64-bit)
locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] AgiMicroRna_2.6.0 affycoretools_1.28.0 KEGG.db_2.7.1
[4] GO.db_2.7.1 RSQLite_0.11.2 DBI_0.2-5
[7] AnnotationDbi_1.18.4 preprocessCore_1.18.0 affy_1.34.0
[10] limma_3.12.3 Biobase_2.16.0 BiocGenerics_0.2.0
loaded via a namespace (and not attached):
[1] affyio_1.24.0 annaffy_1.28.0 annotate_1.34.1
[4] BiocInstaller_1.4.9 biomaRt_2.12.0 Biostrings_2.24.1
[7] Category_2.22.0 gcrma_2.28.0 genefilter_1.38.0
[10] GOstats_2.22.0 graph_1.34.0 grid_2.15.1
[13] GSEABase_1.18.0 IRanges_1.14.4 lattice_0.20-6
[16] RBGL_1.32.1 RCurl_1.95-3 splines_2.15.1
[19] stats4_2.15.1 survival_2.36-14 tools_2.15.1
[22] XML_3.95-0.1 xtable_1.7-0 zlibbioc_1.2.0
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