[BioC] new package for generating interactive HTML reports

[Steve Lianoglou]

Cool!


On Thu, Jan 10, 2013 at 6:49 PM, Josh Kaminker <kaminker.josh at gene.com> wrote:
> Hi all,
>
> We present a new R package,
> ReportingTools<http://www.bioconductor.org/packages/devel/bioc/html/ReportingTools.html>,
> for transforming the output of various Bioconductor packages into
> interactive web pages.  We have found this package very useful in our
> collaborations with both bench and other computational scientists.  Examples
> and instructions for generating output using this package can be found
> here: http://research-pub.gene.com/ReportingTools/
>
> With just three lines of user code, rich HTML documents can be generated
> from the result objects produced by several standard Bioconductor packages
> including edgeR, limma, GOstats, and GSEAlm.  By default, ReportingTools
> reports include hyperlinks to relevant external databases and are highly
> interactive through the use of filtering and sorting options provided by
> open source javascript libraries.  Supporting javascript and css libraries
> are included with all reports, allowing them to be examined on a local
> computer without a network connection.  Additionally, in-line graphics have
> been developed to accompany statistical results to allow convenient visual
> inspection of underlying raw data.  ReportingTools output is highly
> customizable and this package can be used equally well to share results
> from automated pipeline processes or individual customized analyses.
>
> We are very interested in receiving your feedback including feature
> requests for this package.
>
> Best regards,
>
> Josh Kaminker
> Melanie Huntley
> Jason Hackney
> Jessica Larson
> Christina Chaivorapol
>
>
> --
> Josh Kaminker
> Scientist
> Department of Bioinformatics and Comp. Biology
> Genentech Inc.
> 1 DNA Way
> South San Francisco, CA 94080
> tel.: +1 650 467 8921
> fax: +1 650 225 5389
>
>         [[alternative HTML version deleted]]
>
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-- 
Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact