[BioC] GO to Enzyme Commission number conversion!
Priya [guest]
guest at bioconductor.org
Fri Feb 22 17:38:56 CET 2013
http://www.bioconductor.org/packages//2.10/data/annotation/manuals/KEGG.db/man/KEGG.db.pdf
Hi,
I read the documentation from the above link to see if there is any tool that can convert GO annotations to Enzyme Commission numbers automatically. I went through the file at
http:/www.geneontology.org/mapping/ec2go
I have a big file which contains GO Annotations and my objective is to convert those GO Annotations to Enzyme Commission numbers for further analysis.
I would like to check if KEGG.db will be able to do this GO to Enzyme commission number conversion.
Thanks.
Priya
-- output of sessionInfo():
Examples
xx <- as.list(KEGGGO2ENZYMEID)
if(length(xx) > 0){
# Get the value of the first key
xx[[1]]
# Get values for a few keys
if(length(xx) >= 3){
xx[1:3]
}
}
This is the R code that is available.
--
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