[BioC] Install devel version of edgeR

[Gordon K Smyth]

Alternatively you can download from:

http://bioconductor.org/packages/2.11/bioc/html/edgeR.html

Gordon

On Fri, 14 Sep 2012, Gordon K Smyth wrote:

> Dear Javier,
>
> This is a question for the Bioc managers, but the following page might answer 
> your question:
>
> http://www.bioconductor.org/developers/useDevel/
>
> Best wishes
> Gordon
>
> On Thu, 13 Sep 2012, Javier Simón-Sánchez wrote:
>
>> Hello Gordon,
>> 
>> Thanks a lot for your reply.
>> 
>> How can I upgrade to the latest version of edge R? I have checked on  the
>> list and it looks like i need version 2.99.3. However, the one you provide
>> at http://www.bioconductor.org/packages/2.10/bioc/html/edgeR.html is
>> edgeR_2.6.12. How can I get the needed version?
>> 
>> Thanks a lot for your help.
>> 
>> On Thu, Sep 13, 2012 at 2:43 AM, Gordon K Smyth <smyth at wehi.edu.au> wrote:
>> 
>>> Dear Javier,
>>> 
>>> This error has been discused a number of times on this list.  The solution
>>> is to upgrade edgeR to the current devel version.
>>> 
>>> Also please see the Bioconductor posting guide:
>>>
>>>  http://www.bioconductor.org/**help/mailing-list/posting-**guide/<http://www.bioconductor.org/help/mailing-list/posting-guide/>
>>> 
>>> Best wishes
>>> Gordon
>>>
>>>  Date: Tue, 11 Sep 2012 13:04:55 +0200
>>>> From: Javier Sim?n-S?nchez <simonsanchezj at gmail.com>
>>>> To: bioconductor at r-project.org
>>>> Subject: [BioC] edgeR GLM error
>>>> 
>>>> Hello,
>>>> My name is Javier Simón Seanchez and I'm a post-doc at the VUmc in
>>>> Amsterdam.
>>>> 
>>>> The reason of this e-mail is that im running edgeR in an expression
>>>> dataset
>>>> and getting the following error when calculating the GLM common
>>>> dispersion:
>>>> 
>>>> *Error in beta[k, ] <- betaj[decr, ] :
>>>>  NAs are not allowed in subscripted assignments
>>>> *
>>>> 
>>>> Im running cases versus controls and I want to modulate for different
>>>> tissues. How can I overcome this error?
>>>> 
>>>> Thanks a lot in advance
>>>> 
>>>> --
>>>> Javier Simon-Sanchez
>>>> 
>>>> 
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>> 
>> 
>> 
>> 
>> -- 
>> Javier Simon-Sanchez
>

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