[BioC] counts from HTSeq vs DEXSeq

[Simon Anders]

Hi

> I used HTSeq to count the reads in RNA-seq data. When I used these
> counts in DEXSeq and execute the function geneCountTable, the counts
> generated from geneCountTable are different compared to the original
> HTSeq counts. Did anyone observe this discrepancy?

I'm not sure if In understand your question. Which HTSeq script have you 
used?

See also this thread, which might answer your question:

http://seqanswers.com/forums/showthread.php?t=15637

   Simon