[BioC] Library not loaded: /usr/local/lib/libgvc.5.dylib (Rgraphviz)

[Dan Tenenbaum]

On Tue, Jul 17, 2012 at 6:39 PM, Peng Yu <pengyu.ut at gmail.com> wrote:
>>> ~$ ll -go /usr/local/lib/libgvc.6.dylib
>>> -rwxrwxr-x 1 988980 2012-05-21 00:21:09 /usr/local/lib/libgvc.6.dylib
>
> Obviously, I have graphviz installed. Otherwise, I would not have the
> above file. The problem is that my installation is newer (see version
> below).
>
> ~$ dot -v
> dot - graphviz version 2.29.20120702.0446 (20120702.0446)
> libdir = "/opt/local/lib/graphviz"
> Activated plugin library: libgvplugin_pango.6.dylib
> Using textlayout: textlayout:cairo
> Activated plugin library: libgvplugin_dot_layout.6.dylib
> Using layout: dot:dot_layout
> Activated plugin library: libgvplugin_core.6.dylib
> Using render: dot:core
> Using device: dot:dot:core
> The plugin configuration file:
>         /opt/local/lib/graphviz/config6
>                 was successfully loaded.
>     render      :  cairo dot eps fig gd lasi map pic pov ps quartz svg tk
> vml vrml xdot
>     layout      :  circo dot fdp neato nop nop1 nop2 osage patchwork sfdp twopi
>     textlayout  :  textlayout
>     device      :  bmp canon cgimage cmap cmapx cmapx_np dot eps exr fig gd
> gd2 gif gv imap imap_np ismap jp2 jpe jpeg jpg pct pdf pic pict plain
> plain-ext png pov ps ps2 psd sgi svg svgz tga tif tiff tk vml vmlz
> vrml wbmp webp x11 xdot xlib
>     loadimage   :  (lib) bmp eps gd gd2 gif jpe jpeg jpg pdf png ps svg webp xbm
>
>
>> It says that you need to install graphviz first, preferably version
>> 2.26.3, from here if you are running Snow Leopard or newer:
>
>> http://www.graphviz.org/pub/graphviz/stable/macos/snowleopard/graphviz-2.26.3.pkg
>
> Is there a maintainer who can build Rgraphviz for the latest graphviz?

There is a version of graphviz in the works that has graphviz bundled,
so you won't need to worry about installing graphviz at all. In the
meantime, installing the suggested version usually works.

Dan


>
> --
> Regards,
> Peng