[BioC] Installation Trouble for bioc packages (FunciSNP, RSNPper) for v 2.15.1 (64-pc-linux-gnu (64-bit))

[Dan Tenenbaum]

On Thu, Jul 12, 2012 at 3:09 PM, Timothy Duff <timothy.duff at ncf.edu> wrote:
> Hi. I haven't been able to install these two packages on my machine using
> the standard bioclite installer.


FunciSNP is not available in the release version of Bioconductor, only
the devel version:
http://bioconductor.org/developers/useDevel/

RSNPper has not been part of Bioconductor since Bioconductor 2.3.

Dan



> It keeps telling me that the packages
> aren't available for my version of R and that certain installed directories
> are not writable.




> Here's the session info.
>
> ---
>
> R version 2.15.1 (2012-06-22)
> Platform: x86_64-pc-linux-gnu (64-bit)
>
> locale:
>  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
>  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
>  [7] LC_PAPER=C                 LC_NAME=C
>  [9] LC_ADDRESS=C               LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] BiocInstaller_1.4.7
>
> loaded via a namespace (and not attached):
> [1] tcltk_2.15.1 tools_2.15.1
>
> ---
>
> Here are the tracebacks for the commands
> ---
>
> 2: stop(txt, domain = NA)
> 1: library("FunciSNP")
>
> 2: stop(txt, domain = NA)
> 1: library("FunciSNP")
>
> --
> Tim
>
>         [[alternative HTML version deleted]]
>
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