[BioC] Error fom XPS installation

[cstrato]

Dear Binbin,

The error message says that the ROOT library libCint.so cannot be found.

Did you create a ".bashrc" file with the settings:
    export ROOTSYS=<path>/root
    export PATH=$ROOTSYS/bin:$PATH
    export LD_LIBRARY_PATH=$ROOTSYS/lib:$LD_LIBRARY_PATH

Did you compile ROOT for 32bit or 64bit?
For 64bit you would need to configure:
./configure linuxx8664gcc (see ./configure --help)

Please note that the recommended ROOT version for R-2.15.x is 
root_v5.32.01. I did not yet test if root_v5.34 does work.

If you still cannot install xps using biocLite() then I would download 
the source code and do:
R64 CMD INSTALL xps_1.16.0.tar.gz
(or: R64 CMD INSTALL -l <your path to packages> xps_1.16.0.tar.gz)

Best regards,
Christian
_._._._._._._._._._._._._._._._._._
C.h.r.i.s.t.i.a.n   S.t.r.a.t.o.w.a
V.i.e.n.n.a           A.u.s.t.r.i.a
e.m.a.i.l:        cstrato at aon.at
_._._._._._._._._._._._._._._._._._



On 7/5/12 6:24 PM, Liu, Binbin wrote:
> Hello there,
>
> After checking through the mailing-list archive, I couldn't find a solution to my problem.
>
> I installed ROOT v5.34 under my local directory in Fedora16 OS, then tested. It runs OK.
> Then I tried to install xps via biocLite("xps", type="source"), and got error message as
> ".....................
> Generating dictionary xpsDict.cxx...
> rootcint: error while loading shared libraries: libCint.so: cannot open shared object file: No such file or directory
> make: *** [xpsDict.cxx] Error 127
> ERROR: compilation failed for package ‘xps’
> "
>
>> sessionInfo()
> R version 2.15.0 (2012-03-30)
> Platform: x86_64-redhat-linux-gnu (64-bit)
>
> locale:
>   [1] LC_CTYPE=en_US.utf8       LC_NUMERIC=C
>   [3] LC_TIME=en_US.utf8        LC_COLLATE=en_US.utf8
>   [5] LC_MONETARY=en_US.utf8    LC_MESSAGES=en_US.utf8
>   [7] LC_PAPER=C                LC_NAME=C
>   [9] LC_ADDRESS=C              LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.utf8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] BiocInstaller_1.4.7
>
> loaded via a namespace (and not attached):
> [1] tools_2.15.0
>
>
> Could someone drop some hints on how to solve this problem please?
>
> B
>
>
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>
>
>
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