[BioC] Linkage Disequilibrium Analysis

[Valerie Obenchain]

Have a look at the snpStats and GWASTools packages.

Valerie


On 07/05/2012 06:31 AM, Ovokeraye Achinike-Oduaran wrote:
> Thanks Mete. I know about Haploview but I was hoping to find something in R.
>
> Thanks again.
>
> -Avoks
>
> On Thu, Jul 5, 2012 at 3:13 PM, Mete Civelek<mcivelek at mednet.ucla.edu>  wrote:
>> Not sure about a Bioconductor package but you can try Haploview from Broad
>> Institute.
>>
>> -----Original Message-----
>> From: bioconductor-bounces at r-project.org
>> [mailto:bioconductor-bounces at r-project.org] On Behalf Of Ovokeraye
>> Achinike-Oduaran
>> Sent: Thursday, July 05, 2012 2:58 PM
>> To: bioconductor at r-project.org
>> Subject: [BioC] Linkage Disequilibrium Analysis
>>
>> Hi all,
>>
>> Is there a package that takes just SNPs rs IDs as input to perform LD
>> analysis and draw haplotype blocks?
>>
>> Thanks.
>>
>> -Avoks
>>
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