[BioC] About Rstudio via Amazon web services.

[Dan Tenenbaum]

On Thu, Dec 27, 2012 at 7:04 AM, gregory voisin <voisingreg at yahoo.fr> wrote:
> For your information,
> 3 weeks ago, I subscribed to Amazon web services to use R studio and
> bioconductor.
> Here, I highlight a problem about the weird bill associated to the Amazon
> web services:
>
> When you create a stack , a stockage volume is created and normally when you
> delete a stack,the stockage volume is deleted too.
>
> But, in my case, the deletion of volume was problematic and after, 3 weeks
> of usage, I had 40 stockage volume ( 40 gig by volume)associated to my
> Amazon account and I have paid for that ( the first 40 gig is free). The
> charge for that is not important ( 20 $CA for 3 weeks) but could be more
> important if you don't check.
>
> It's not very clear if it's a lack of understanding of me or if it's a
> technical problem associated to web service
>
> when you delete your instance, check your stockage volume:
> 1.http://aws.amazon.com/fr/console/
> 2. connect to AWS console
> 3. click on EC2 ( virtual servers in the cloud)
> 4. In part " My services" : check EBS volume(normally :0)
>

Thanks for the report. I will add a note to our documentation about
this so that others are aware that this can happen.
Dan


> Greg
>  Montreal
>
>
>
>
>
> ________________________________
> De : Dan Tenenbaum <dtenenba at fhcrc.org>
> À : gregory voisin <voisingreg at yahoo.fr>
> Cc : "bioconductor at r-project.org" <bioconductor at r-project.org>
> Envoyé le : Jeudi 27 décembre 2012 2h35
> Objet : Re: [BioC] Kegg Profile package problem
>
> On Wed, Dec 26, 2012 at 6:54 AM, gregory voisin <voisingreg at yahoo.fr> wrote:
>>
>>
>>
>> Hi,
>> I use KeggProfile in my pipeline analysis and it's efficient, but I have
>> problem with one pathway_ID.
>>
>> Exemple ( copy and paste):
>>
>> require(KEGGprofile)
>> download_KEGGfile(pathway_id="04110",specis='hsa')
>>
>> #In this case , not problem
>>
>> download_KEGGfile(pathway_id="00910",specis='hsa')
>
>
> I think perhaps there is no such pathway. Here's a list of all human
> pathways:
> http://rest.kegg.jp/list/pathway/hsa
>
> 04110 is included but 00910 is not.
>
> Dan
>
>
>>
>> #this pahway exits in KEGG, but the download is impossible
>> #[1] "Downloading files: 1/1"
>> #essai de l'URL
>> 'http://www.genome.jp/kegg-bin/download?entry=hsa00910&format=kgml'
>> #Content type 'text/plain' length unknown
>> #URL ouverte
>> #downloaded 1 bytes
>>
>> #essai de l'URL 'http://www.genome.jp/kegg/pathway/hsa/hsa00910.png'
>> #Erreur dans download.file(paste("http://www.genome.jp/kegg/pathway/",
>> specis,  :
>> #  impossible d'ouvrir l'URL
>> 'http://www.genome.jp/kegg/pathway/hsa/hsa00910.png'
>> #De plus : Message d'avis :
>> #In download.file(paste("http://www.genome.jp/kegg/pathway/", specis,  :
>> #  ouverture impossible : le statut HTTP était '404 Not Found'
>>
>>
>> My solution :  omit this pathway in my analysis: ponctual, fast  but not
>> very elegant and not professional !!
>>
>> If someone has a suggestion , comments or solution, let's go ,
>>
>> Thanks
>>
>> Greg
>> Montréal
>>
>>        [[alternative HTML version deleted]]
>>
>>
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>
>