[BioC] coXpress package

Seb seba.bat at gmail.com
Sun Dec 16 20:07:55 CET 2012


i do have EBcoexpress but it's giving me all sorts of problems (i will
send a separate email with that). so i thought about using a different
package.

otherwise any other suggestion for alternatives?

thanks

Seb

On Sat, Dec 15, 2012 at 7:40 PM, Dan Tenenbaum <dtenenba at fhcrc.org> wrote:
> On Sat, Dec 15, 2012 at 4:10 PM, Seb <seba.bat at gmail.com> wrote:
>> hi all
>>
>> i'm trying to install the coXpress package but, running R 2.15.1 i get
>> the followig error:
>>
>> "Error: package ‘coXpress’ was built before R 2.10.0: please re-install it"
>>
>> i did re-install it but nothing changed, any idea?
>>
>
>
> coXpress is not a bioconductor package.
>
> Are you talking about EBcoexpress?
>
> If so, it looks like you already have the appropriate version
> installed for your version of R.
> If you are having trouble loading EBcoexpress, try starting a fresh R
> session, preferably like this:
>
> R --vanilla
>
> Then:
>
> source("http://bioconductor.org/biocLite.R")
> biocLite("EBcoexpress")
> library(EBcoexpress)
>
> Dan
>
>
>
>
>> thanks
>>
>> Seb
>>
>>
>>
>>
>> R version 2.15.1 (2012-06-22)
>> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>>
>> locale:
>> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>>
>> attached base packages:
>> [1] stats     graphics  grDevices utils     datasets  methods   base
>>
>> other attached packages:
>> [1] EBcoexpress_1.2.0  minqa_1.2.1        Rcpp_0.10.1        mclust_4.0
>> [5] EBarrays_2.22.0    lattice_0.20-10    Biobase_2.18.0     BiocGenerics_0.4.0
>>
>> loaded via a namespace (and not attached):
>> [1] cluster_1.14.3 grid_2.15.1    tools_2.15.1
>>
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