[BioC] Oligo package annotation

[Bruno [guest]]

Hi all,
My question is quite straight-forward: how do i retrieve EntrezId or geneSymbol for pd.hugene.1.1.st.v1 to merge into my gene expression matrix? I havent found any vignettes explaining this. I know that the annotation file is a SQLite DB which i have to query. However im failing to find the tables i need. Sorry if i persevere in not explaining myself enough.


 -- output of sessionInfo(): 

R version 2.15.1 (2012-06-22)
Platform: x86_64-pc-mingw32/x64 (64-bit)

locale:
[1] LC_COLLATE=English_United Kingdom.1252  LC_CTYPE=English_United Kingdom.1252    LC_MONETARY=English_United Kingdom.1252
[4] LC_NUMERIC=C                            LC_TIME=English_United Kingdom.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] pd.hugene.1.1.st.v1_3.8.0 oligo_1.22.0              affyPLM_1.34.0            preprocessCore_1.20.0     latticeExtra_0.6-24      
 [6] lattice_0.20-10           RColorBrewer_1.0-5        BiocInstaller_1.8.3       simpleaffy_2.34.0         gcrma_2.30.0             
[11] genefilter_1.40.0         affy_1.36.0               limma_3.14.3              RSQLite_0.11.2            DBI_0.2-5                
[16] Biobase_2.18.0            oligoClasses_1.20.0       BiocGenerics_0.4.0       

loaded via a namespace (and not attached):
Error in x[["Version"]] : subscript out of bounds
In addition: Warning message:
In FUN(c("affxparser", "affyio", "annotate", "AnnotationDbi", "Biostrings",  :
  DESCRIPTION file of package 'survival' is missing or broken

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