[BioC] problem installing affyPLMpackage

[Matthew McCormack]

Thank you very much Vincent and Dan for your help.  I was able to 
successfully install the affyPLM package on R 2.12.1

Matthew

On 4/20/2011 5:31 PM, Dan Tenenbaum wrote:
> Matthew and Vince,
>
> On Wed, Apr 20, 2011 at 1:55 PM, Vincent Carey
> <stvjc at channing.harvard.edu>  wrote:
>> I can confirm that the binary was unavailable now for R 2.12.1, using windows 7.
>>
>> However, I was able to build and install from source on windows 7,
>> using the current Rtools for windows.  So that is one possible
>> workaround until the binary is available again.
>>
>> Note that current R is 2.13; with that version, biocLite installation
>> succeeded on windows 7.
>>
>> On Wed, Apr 20, 2011 at 3:20 PM, Matthew McCormack
>> <mccormack at molbio.mgh.harvard.edu>  wrote:
>>> I am getting the following error message when I try to install the
>>> affyPLM package:
>>>
>>> Using R version 2.12.1, biocinstall version 2.7.6.
>>> Installing Bioconductor version 2.7 packages:
>>> [1] "affyPLM"
>>> Please wait...
>>>
>>> Installing package(s) into 'C:\Users\matthew\Documents/R/win-library/2.12'
>>> (as 'lib' is unspecified)
>>> Warning message:
>>> In getDependencies(pkgs, dependencies, available, lib) :
>>>    package 'affyPLM' is not available
>>>
>>>    I am using 64-bit R (v. 2.12.1) on Windows7.
>
> There is now a dual-arch binary of affyPLM for R 2.12 (Bioconductor 2.7).
> If you install as follows:
>
> source("http://bioconductor.org/biocLite.R")
> biocLite("affyPLM")
>
> I can confirm that it will work.
>
> As Vince points out, upgrading to R 2.13 is another option.
>
> Dan
>
>
>>> Matthew McCormack
>>>
>>>
>>>         [[alternative HTML version deleted]]
>>>
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