[BioC] GO enrichment and pathways

[Marc Carlson]

Hi Yuan,

You can also click the links of the specific packages and explore their 
vignettes (which are listed/linked on the specific pages for each 
package).  For example, you could look at the vignettes for the GOstats 
package on it's page here:

http://www.bioconductor.org/packages/release/bioc/html/GOstats.html

   Marc


On 04/14/2011 08:15 AM, Steve Lianoglou wrote:
> Hi,
>
> On Thu, Apr 14, 2011 at 11:01 AM, Radhouane Aniba<aradwen at gmail.com>  wrote:
>> Hi everyone,
>>
>> I am looking for a bioconductor packages that take a gene list and output
>> the enrichement in term of GO (which processes ? wchich functions ?) and
>> eventually kegg pathways with pvalues that describes the enrichement
>>
>> Any idea ? or help ?
> Sure. Go to the bioconductor software page:
>
> http://www.bioconductor.org/packages/release/bioc/
>
> And use your browsers "Find ..." function to search for the
> occurrences of "ontology" on that page.
>
> The "GOstats" package won't turn up using those steps, but that's
> because it mentions GO instead of gene ontology -- so, if you want to
> be thorough, you can do a second pass with "Find ..." for the word
> "GO"
>
> -steve
>