[BioC] edgeR and deSEQ glms

[Wolfgang Huber]

Dear Shreyartha

no offense, please, but you might get a better response if you more 
precisely describe what the goal of the experiment / your scientific 
question is.

	Best wishes
	Wolfgang


Shreyartha Mukherjee scripsit 03/04/11 22:16:
> Hi ,
>
> I am looking to compare multiple libraries and not pairwise comparisons.
> There are GLM functions in edgeR, are there similar functions in deseq as
> well?
>
> Thanks,
> Shreyartha
>
>
> On Fri, Apr 1, 2011 at 6:05 PM, Naomi Altman<naomi at stat.psu.edu>  wrote:
>
>> Do you mean most differentially expressed?  This is straight forward with
>> either edgeR or DESeq.
>>
>> Naomi
>>
>>
>> At 04:52 PM 4/1/2011, you wrote:
>>
>>> Hi,
>>>
>>> I have RNA-seq count data for 3 genotypes(3 replicates each) for the same
>>> conditions. Is there a way to find most variable genes among all three?
>>>
>>>
>>> Thanks,
>>> Shreyartha
>>>
>>>         [[alternative HTML version deleted]]
>>>
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>>
>>
>>
>>
>
> 	[[alternative HTML version deleted]]
>
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-- 


Wolfgang Huber
EMBL
http://www.embl.de/research/units/genome_biology/huber