[BioC] Problems with Downloading packages

[Martin Morgan]

On 03/16/2010 09:40 AM, Abbhirami Rajagopal wrote:
> Hi
> 
> I am new to R and bioconductor, I have been trying to download the packages
> for flow cytometry data analysis
> 
> Below is the error message I got- I had to reinstall R a few times before I
> got to this stage. The installation seemed to have work fine but I still
> cannot get the package- please HELP

Hi Abi -- are you installing using the instructions at

  http://bioconductor.org/install

? Please provide a complete transcript. Martin

> 
> Regds
> Abi
> 
> * installing *source* package ‘flowCore’ ...
> ** libs
> ** arch - i386
> sh: make: command not found
> ERROR: compilation failed for package ‘flowCore’
> * removing
> ‘/Library/Frameworks/R.framework/Versions/2.10/Resources/library/flowCore’
> * restoring previous
> ‘/Library/Frameworks/R.framework/Versions/2.10/Resources/library/flowCore’
> 
> The downloaded packages are in
> ‘/private/var/folders/32/32m0GhxDHKS-TBOPVk6WIU+++TI/-Tmp-/Rtmpdm9kpV/downloaded_packages’
>> library(flowcore)
> Error in library(flowcore) : there is no package called 'flowcore'
> In addition: Warning message:
> In install.packages(c("flowCore"), lib =
> "/Library/Frameworks/R.framework/Resources/library/",  :
>   installation of package 'flowCore' had non-zero exit status
>>
> 
> 	[[alternative HTML version deleted]]
> 
> 
> 
> 
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-- 
Martin Morgan
Computational Biology / Fred Hutchinson Cancer Research Center
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