[BioC] problem on install package RBGL

[Li Long]

you are using an old version of RBGL.  The latest release has taken care
of this issue.

Li

>
>
> hi,
>   I met a problem when install RBGL package.
> here is
> the error information:
> * Installing
> *source* package ‘RBGL’ ...
> untarring boost include
> tree...
> ** libs
> g++
> -I/usr/share/R/include     -IboostIncl 
> -fpic  -g -O2 -c bbc.cpp -o bbc.o
> In file included from
> boostIncl/boost/mpl/apply.hpp:23,
>                 
> from boostIncl/boost/iterator/iterator_facade.hpp:34,
>                 
> from boostIncl/boost/generator_iterator.hpp:16,
>                 
> from RBGL.hpp:17,
>                 
> from bbc.cpp:1:
> boostIncl/boost/mpl/apply_wrap.hpp:81:31: error:
> missing binary operator before token "("
> boostIncl/boost/mpl/apply_wrap.hpp:173:31: error: missing binary
> operator before token "("
> In file included from
> boostIncl/boost/mpl/bind.hpp:27,
>                 
> from boostIncl/boost/mpl/lambda.hpp:18,
>                 
> from boostIncl/boost/mpl/apply.hpp:25,
>                 
> from boostIncl/boost/iterator/iterator_facade.hpp:34,
>                 
> from boostIncl/boost/generator_iterator.hpp:16,
>                 
> from RBGL.hpp:17,
>                 
> from bbc.cpp:1:
> boostIncl/boost/mpl/apply_wrap.hpp:81:31: error:
> missing binary operator before token "("
> boostIncl/boost/mpl/apply_wrap.hpp:173:31: error: missing binary
> operator before token "("
> In file included from
> boostIncl/boost/mpl/lambda.hpp:18,
>                 
> from boostIncl/boost/mpl/apply.hpp:25,
>                 
> from boostIncl/boost/iterator/iterator_facade.hpp:34,
>                 
> from boostIncl/boost/generator_iterator.hpp:16,
>                 
> from RBGL.hpp:17,
>                 
> from bbc.cpp:1:
> boostIncl/boost/mpl/bind.hpp:364:31: error: missing
> binary operator before token "("
> boostIncl/boost/mpl/bind.hpp:531:31: error: missing binary operator
> before token "("
> In file included from
> boostIncl/boost/mpl/lambda.hpp:22,
>                 
> from boostIncl/boost/mpl/apply.hpp:25,
>                 
> from boostIncl/boost/iterator/iterator_facade.hpp:34,
>                 
> from boostIncl/boost/generator_iterator.hpp:16,
>                 
> from RBGL.hpp:17,
>                 
> from bbc.cpp:1:
> boostIncl/boost/mpl/aux_/full_lambda.hpp:230:31:
> error: missing binary operator before token "("
> In file
> included from boostIncl/boost/iterator/iterator_facade.hpp:34,
>                 
> from boostIncl/boost/generator_iterator.hpp:16,
>                 
> from RBGL.hpp:17,
>                 
> from bbc.cpp:1:
> boostIncl/boost/mpl/apply.hpp:138:31: error: missing
> binary operator before token "("
> In file included from
> /usr/include/c++/4.4/backward/hash_set:59,
>                 
> from boostIncl/boost/graph/adjacency_list.hpp:22,
>                 
> from RBGL.hpp:26,
>                 
> from bbc.cpp:1:
> /usr/include/c++/4.4/backward/backward_warning.h:28:2: warning: #warning
> This file includes at least one deprecated or antiquated header which may
> be removed without further notice at a future date. Please use a
> non-deprecated interface with equivalent functionality instead. For a
> listing of replacement headers and interfaces, consult the file
> backward_warning.h. To disable this warning use -Wno-deprecated.
> make: *** [bbc.o] error 1
> ERROR: compilation failed for package
> ‘RBGL’
> * Removing
> ‘/home/trace/R/i486-pc-linux-gnu-library/2.9/RBGL’
>
> The downloaded packages are in
>    
> ‘/tmp/Rtmp6CoA1c/downloaded_packages’
> Warning message:
> In install.packages(pkgs = pkgs, repos = repos, dependencies =
> dependencies,  :
>   installation of package 'RBGL' had
> non-zero exit status
> and this is my r information:
> sessionInfo()
> R version 2.9.2 (2009-08-24)
>
> i486-pc-linux-gnu
>
> locale:
> LC_CTYPE=zh_CN.UTF-8;LC_NUMERIC=C;LC_TIME=zh_CN.UTF-8;LC_COLLATE=zh_CN.UTF-8;LC_MONETARY=C;LC_MESSAGES=zh_CN.UTF-8;LC_PAPER=zh_CN.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=zh_CN.UTF-8;LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats    
> graphics  grDevices utils     datasets 
> methods   base    
>
> other
> attached packages:n
> [1] graph_1.22.5
>
> loaded via a
> namespace (and not attached):
> [1] tcltk_2.9.2 tools_2.9.2
>
> My g++ version is 4.4.1 ubuntu
>
>
> thanks.
>
> LiYun
>
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>
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