[BioC] R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)

[Steve Lianoglou]

> They'll be in fasta format, and whether or not Bioconductor can read  
> them in I have no idea - I use Bioperl for all my sequence handling.


Yes, bioconductor can: the Biostrings package provides readFASTA and  
writeFASTA that handle this for you.

-steve

--
Steve Lianoglou
Graduate Student: Physiology, Biophysics and Systems Biology
Weill Medical College of Cornell University

Contact Info: http://cbio.mskcc.org/~lianos