[BioC] build a chromLocation object for SNP locations, not genes
Paul Shannon
pshannon at systemsbiology.org
Fri Jun 26 21:18:54 CEST 2009
I wish to build a chromLocation object and display it with geneplotter.
However, I am not interested in gene locations. Instead, I want to
examine the density and distribution of SNPs across a chromosome. So
I begin with simple chromosomal locations for many SNPs.
I found some documentation; 'How to Assemble a chromLocation Object'
seemed especially promising. But it turns out that this is
specialized on buiding a chromLocation object from a data package (in
this case, hu6800.db).
Can I get some guidance on building a chromLocation object from
scratch, starting with just a set of SNP coordinates?
Thanks,
- Paul
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