[BioC] error massage = subscript out of bounds

[Florian Hahne]

The problem was caused by a bug in the cellHTS2 package which has been  
fixed in the latest devel version (2.9.6). The fix has also been  
pushed back into the release branch (version 2.8.1)
Florian



On 05.06.2009, at 16:42, Hecker Regina wrote:

> Dear Bioconductor-Team,
>
> I am currently using the R-package cellHTS to analyse RNAi screening  
> data. As I have not worked with R before, I modify the vignette  
> "analysis of multi-channel cell-based screens" according to my  
> experiment. After defining my controls I perform the writeReport  
> command and get the follwing error:
>
>
>
>> out <- writeReport(cellHTSlist = list(raw = x), outdir = "raw- 
>> pgl4-",posControls = posControls, negControls = negControls)
>
> cellHTS2 is busy creating HTML pages for 'AP2betapGl4'.
>
> Found raw data.
>
> State:
>
> configured=TRUE, annotated=FALSE
>
> 0% done (step 1 of 6)
>
> 17% done (step 2 of 6)
>
> 24% done (step 3 of 6)Fehler in b[i:(da[1] + i - 1), j:(da[2] + j -  
> 1)] = a :
>
>  Indizierung außerhalb der Grenzen
>
> Zusätzlich: Warning message:
>
> The 'cellHTSlist' argument is deprecated.
>
> Please provide all necessary cellHTS objects separately via the  
> 'raw', 'normalized' and 'scored' arguments`
>
>
>
>
>
> As I cannot identify the source of the error, I am not sure what it  
> means or which files / commands I will have to change.
>
> Do you have any experience with this or could you explain this error  
> to a novel Biocondutor user?
>
> Thanks a lot,
>
> Regina
>
> _____________________________
>
>
>
> Regina Hecker
>
> Ph.D. Student
>
> University Children's Hospital Zürich
> Division of Oncology
> August Forel Str.1
> 8008 Zürich
>
>
>
> Tel.  +41 44 634 8801
> Fax. +41 44 634 8859
>
>
>
> e-mail: Regina.Hecker at kispi.uzh.ch <mailto:Regina.Hecker at kispi.uzh.ch>
>
>
>
>
>
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