[BioC] IRanges problem: ranges (overlap (range.1, range.2)) does not seem to work
Paul Shannon
pshannon at systemsbiology.org
Mon Jun 8 19:43:23 CEST 2009
Reading in ?RangesMatching-class that
'To get the actual regions of intersection between the overlapping
ranges, use the 'ranges' accessor'
But in my possibly naive or mistaken use, it does not seem to work:
range.1 = IRanges (start = c (10, 20), end = c (15, 23))
range.2 = IRanges (start = c (13, 19), end = c (18, 25))
overlap.12 = overlap (range.1, range.2)
ranges (overlap.12)
Error in is(query, "Ranges") :
element 1 is empty;
the part of the args list of 'class' being evaluated was:
(object)
Any advice? Thanks!
- Paul
sessionInfo ()
R version 2.9.0 (2009-04-17)
x86_64-unknown-linux-gnu
locale:
LC_CTYPE
=
en_US
.UTF
-8
;LC_NUMERIC
=
C
;LC_TIME
=
en_US
.UTF
-8
;LC_COLLATE
=
en_US
.UTF
-8
;LC_MONETARY
=
C
;LC_MESSAGES
=
en_US
.UTF
-8
;LC_PAPER
=
en_US
.UTF
-8
;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_I\
DENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] Biostrings_2.12.1 IRanges_1.2.2 RMySQL_0.7-4
DBI_0.2-4 RUnit_0.4.22
loaded via a namespace (and not attached):
[1] Biobase_2.4.1 tools_2.9.0
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