[BioC] biomaRt not working?
john seers (IFR)
john.seers at bbsrc.ac.uk
Thu Jun 4 12:18:46 CEST 2009
Hello All
Can anyone tell me why I get this error using Biomart? I am connected to
the internet (as in I can install R packages). So is the Biomart website
really down? I have been having this problem for at least 2 or 3 days.
If I access http://www.biomart.org/ using a web browser it appears to be
available.
> listMarts()
Error in value[[3L]](cond) :
Request to BioMart web service failed. Verify if you are still
connected to the internet. Alternatively the BioMart web service is
temporarily down.
If I access http://www.biomart.org/ using a web browser it appears to be
available.
Any suggestions as to what is going on or things to try are very
welcome.
Regards
John Seers
> sessionInfo()
R version 2.9.0 (2009-04-17)
i386-pc-mingw32
locale:
LC_COLLATE=English_United Kingdom.1252;LC_CTYPE=English_United
Kingdom.1252;LC_MONETARY=English_United
Kingdom.1252;LC_NUMERIC=C;LC_TIME=English_United Kingdom.1252
attached base packages:
[1] stats graphics grDevices datasets utils methods base
other attached packages:
[1] biomaRt_2.0.0 limma_2.18.0 affy_1.22.0 Biobase_2.4.1
RWinEdt_1.8-1
loaded via a namespace (and not attached):
[1] affyio_1.12.0 preprocessCore_1.6.0 RCurl_0.95-1
tools_2.9.0 XML_2.3-0
>
More information about the Bioconductor
mailing list