[BioC] BiomaRt error when trying to get exon location info

[john seers (IFR)]

Hi Daniel

Appears to work for me. Version information below.

> Thanks for the example, but that doesn't seem to work for me.

Regards

John



> yoda2[1:5,]
  ensembl_gene_id ensembl_transcript_id exon_chrom_start exon_chrom_end
rank phase ensembl_exon_id chromosome_name external_gene_id strand
1 ENSG00000200792       ENST00000363922         32671367       32671502
1    -1 ENSE00001438685              21          SNORA42     -1
2 ENSG00000199962       ENST00000363092         17870987       17871095
1    -1 ENSE00001437855              21            Y_RNA      1
3 ENSG00000207503       ENST00000384772         41833003       41833123
1    -1 ENSE00001499780              21          SNORA32      1
4 ENSG00000211541       ENST00000390207         32386462       32386602
1    -1 ENSE00001507634              21       AP000263.1     -1
5 ENSG00000207638       ENST00000384906         16833280       16833360
1    -1 ENSE00001499913              21      hsa-mir-99a      1
>



> sessionInfo()
R version 2.8.1 (2008-12-22) 
i386-pc-mingw32 

locale:
LC_COLLATE=English_United Kingdom.1252;LC_CTYPE=English_United
Kingdom.1252;LC_MONETARY=English_United
Kingdom.1252;LC_NUMERIC=C;LC_TIME=English_United Kingdom.1252

attached base packages:
[1] stats     graphics  grDevices datasets  utils     methods   base


other attached packages:
[1] biomaRt_1.16.0 RWinEdt_1.8-0 

loaded via a namespace (and not attached):
[1] RCurl_0.94-0 XML_1.99-0