[BioC] problem with GDS2eSet

[Youngik Yang]

Hi,
I've got following error messages whenever I run GDS2eSet.

 > eset <- GDS2eSet(gds)

File stored at:
/tmp/Rtmpa4UdPv/GPL59.soft
Error in validObject(.Object) :
  invalid class "AnnotatedDataFrame" object:
  AnnotatedDataFrame colnames of data differ from row.names of varMetadata

The following lines were obtained by sessionInfo().

R version 2.7.0 (2008-04-22)
i386-redhat-linux-gnu

locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C

attached base packages:
[1] tools     stats     graphics  grDevices utils     datasets  methods 
[8] base    

other attached packages:
[1] limma_2.9.17   GEOquery_2.2.1 RCurl_0.9-3    Biobase_1.12.2

loaded via a namespace (and not attached):
[1] biclust_0.5       flexclust_0.99-0  grid_2.7.0        lattice_0.17-6  
[5] MASS_7.2-41       modeltools_0.2-15 stats4_2.7.0



Any help will be greatly appreciated.

Thank in advance.
Youngik.