[BioC] Questions regarding LUMI

[Cei Abreu-Goodger]

Dear Leila,

The data() command is for loading data sets that are packaged with other 
programs. What you want to be using is something like:

rawLumi <- lumiR('Leila_90samples_...._geneprofile.txt', ...)

see ?rawLumi for help

Cei


On Fri, 3 Aug 2007, L.N. Laredj wrote:

> Dear Sir/Madam,
>
> I have just been given my input raw data for my array exp using the
> Illumina platform. I see that the example data file on the lumi programme
> is an RDA file - I was able to run and understand the commands for
> background correction and normalisation fine, but I am still unable to make
> the programme read my input data - provided in a text format. Example: When
> typing: >data('Leila_90samples_...._geneprofile.txt') I get a warning
> message that the data could not be found.
>
> I realise this is a trivial problem but I would really appreciate if you
> could help me clarify it.
>
> Looking forward to hearing from you
>
> Best regards,
> Leila
>
> -- 
> Leila N Laredj
> PhD Candidate
> Department of Pathology
> University of Cambridge
> Tel. (01223) 333735
>
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