[BioC] color scheme heatmap.2
Roel Verhaak
verhaak at broad.mit.edu
Sat Apr 28 20:28:17 CEST 2007
Dear list,
I am generating genes vs samples expression heatmaps using the heatmap.2
function from the gplots library. The heatmap data is centered around
zero and varies from approximately -6 to 6.
Like the heatmap function, a color scheme needs to be specified, for
which I have used greenred(75) so far. The most extreme green and red
colors are now assigned to the most extreme values; it is also possible
to define a color scheme that assigns the most extreme colors to not the
most extreme values, for instance -3 and 3 in my case?
Thanks and regards,
Roel Verhaak
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