[BioC] biocLite() fails to install all limma dependencies from CRAN
Jenny Drnevich
drnevich at uiuc.edu
Fri Apr 27 22:48:35 CEST 2007
Hi all,
I just installed R 2.5 today and then installed Bioconductor 2.0
using the recommended biocLite(). I then tried to call
duplicateCorrelation() from limma, but got this error:
> corfit <-
duplicateCorrelation(MA.nobg.scale,design,ndups=1,block=c(1,1,2,2))
Loading required package: statmod
Error: could not find function "mixedModel2Fit"
In addition: Warning message:
there is no package called 'statmod' in: library(package, lib.loc =
lib.loc, character.only = TRUE, logical = TRUE,
It appears that biocLite() didn't get the statmod package from CRAN.
Once I downloaded and installed statmod, everything was fine. I don't
remember having to do this in the past, so did something get
accidentally changed?
Thanks,
Jenny
Jenny Drnevich, Ph.D.
Functional Genomics Bioinformatics Specialist
W.M. Keck Center for Comparative and Functional Genomics
Roy J. Carver Biotechnology Center
University of Illinois, Urbana-Champaign
330 ERML
1201 W. Gregory Dr.
Urbana, IL 61801
USA
ph: 217-244-7355
fax: 217-265-5066
e-mail: drnevich at uiuc.edu
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