[BioC] Editing AnnBuilder function "getSrcUrl"

[John Zhang]

>
>I've been trying to use AnnBuilder (also Resourcerer|) to build
>annotation package for Bos Taurus  and I know I need to edit "species"
>in a number of functions (I expect) in order to do this. I have been
>following discussion (links below) on this topic which indicate that I
>need to edit the "getSrcUrl" function in AnnBuilder. However, I can't
>find this function or "downloadSourceData.R " anywhere. Where is this
>function and how can I edit it ? Thanks in advance.
>

getSrcUrl is in the file named getSrcUrl.R. It will be hard to get it to work by 
editing functions within R as some of the functions are not included in the 
NAMESPACE. You will have to get the source code and work from there. There are 
several places you will need to change (basically by adding code to handle a new 
organism)



> 
>
>https://stat.ethz.ch/pipermail/bioconductor/2007-February/016192.html
>
> 
>
>https://stat.ethz.ch/pipermail/bioconductor/2006-August/014074.html
>
> 
>
>https://stat.ethz.ch/pipermail/bioconductor/2007-February/016200.html
>
> 
>
>Dermot
>
>
>	[[alternative HTML version deleted]]
>
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Jianhua Zhang
Department of Medical Oncology
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084