[BioC] Nimblegen data analysis

[Todd Richmond]

Hi Dhruv,

You probably want to take a look at the oligo package 
(http://bioconductor.org/packages/2.0/bioc/html/oligo.html), which reads 
NimbleGen XYS and NDF files. That will get your data into some standard 
data objects and you can go from there.

Regards, Todd

dhruv pant wrote:
> Hi,
> I had a question regarding reading Nimblegen chip data ('FTR' files,
> probably the equivalent of CEL files)
>  and doing model fitting etc (fitPLM) in R.
> For Affy chips, to do this, one needs the CDF files for the chip and the
> CEL files for further analysis.
> 
> Can something similar be done with the Nimblegen data (given the FTR files
> and the NDF file)  for analysis?
> 
> 
> Thanks
> Dhruv
> 


-- 
Todd Richmond, PhD
Manager of Research Informatics
NimbleGen Systems, Inc
Madison, WI 53719
1-608-218-7600